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  "Title": "Differential Exon Usage Test for RNA-Seq Data via Empirical\nBayes Shrinkage of the Dispersion Parameter",
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  "Author": "Sean Ruddy",
  "Maintainer": "Sean Ruddy <s.ruddy@yahoo.com>",
  "Description": "Differential exon usage test for RNA-Seq data via an\nempirical Bayes shrinkage method for the dispersion parameter\nthe utilizes inclusion-exclusion data to analyze the propensity\nto skip an exon across groups. The input data consists of two\nmatrices where each row represents an exon and the columns\nrepresent the biological samples. The first matrix is the count\nof the number of reads expressing the exon for each sample. The\nsecond matrix is the count of the number of reads that either\nexpress the exon or explicitly skip the exon across the\nsamples, a.k.a. the total count matrix. Dividing the two\nmatrices yields proportions representing the propensity to\nexpress the exon versus skipping the exon for each sample.",
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  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Date/Publication": "2015-09-04 09:25:45 UTC",
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      "title": "DoubleExpSeq is a package with application to RNA-Seq experiments that tests for differential exon usage.",
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        "DoubleExpSeq"
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